Information for 7-GCTGAGCAGTAGC (Motif 18)

A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T G T C A A G T C A C G T A T C G A G T C A C G T A T G C C G T A A T C G A G T C
p-value:1e-9
log p-value:-2.079e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 13.3bp
Average Position of motif in Background51.4 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCTGAGCAGTAGC----
-ATTTACAGTAGCAAAA
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCTGAGCAGTAGC----
-ATGTACAGTAGCAAAG
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCTGAGCAGTAGC
-CACAGCAGGGGG
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCTGAGCAGTAGC--
DCHCAGCAGGRGGCC
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCTGAGCAGTAGC--
---SDGCAGGTGCNS
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCTGAGCAGTAGC
---GAGSCCGAGC
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C
A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCTGAGCAGTAGC----
--ADGGYAGYAGCATCT
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCTGAGCAGTAGC
-GTCAGCANNTN-
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCTGAGCAGTAGC
CCACACAGCAGGAGA
 A C G T A C G T A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCTGAGCAGTAGC
-CTGCGCATGCGC
 A C T G A T G C A C G T A T C G C G T A A C T G A T G C C G T A A C T G A C G T C G T A A C T G A G T C
A C G T A T G C A G C T T C A G T G A C T C A G A T G C T G C A A C G T A T C G G A T C A C T G A G T C