Information for 2-GTCAGRACAGGGC (Motif 6)

A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C
Reverse Opposite:
C T A G G T A C A G T C A G T C A C G T A C T G C G A T A G C T A G T C A C G T C A T G C G T A A G T C
p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.795
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.1 +/- 20.6bp
Average Position of motif in Background51.7 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GTCAGRACAGGGC
-----CACAGN--
 A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTCAGRACAGGGC-
GGTCANYTGAGGWCA
 A C G T A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTCAGRACAGGGC
CCAGGAACAG---
 A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTCAGRACAGGGC
-TRAGGTCA----
 A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTCAGRACAGGGC--
---AGGTCAAGGTCA
 A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTCAGRACAGGGC--
---AGGTCAAGGTCA
 A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GTCAGRACAGGGC-
AAGGTCACGAAAGGTCA
 A C G T A C G T A C G T A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCAGRACAGGGC-
GGGTTACTANAGGTCA
 A C G T A C G T A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTCAGRACAGGGC
--AAGGTCAC---
 A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GTCAGRACAGGGC-
-----AACAGGTGT
 A C T G G A C T G T A C C G T A C T A G T C A G C G T A A G T C C G T A A C T G A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T