Information for 3-CTARTTGACAATYACA (Motif 3)

T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
Reverse Opposite:
C A G T A C T G C G A T T C A G G C T A A C G T A C G T A C T G A G C T G T A C C G T A C G T A A G T C A C G T T G C A A T C G
p-value:1e-13
log p-value:-3.145e+01
Information Content per bp:1.695
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.0 +/- 27.6bp
Average Position of motif in Background52.1 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTARTTGACAATYACA
--ARNTGACA------
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTARTTGACAATYACA-
--NNNTAACAATTATAN
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A A C G T
A C G T A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

SRY/MA0084.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTARTTGACAATYACA
---GTAAACAAT----
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTARTTGACAATYACA
--NNTTGGCANN----
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTARTTGACAATYACA
---RHTGWCAR-----
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTARTTGACAATYACA
ANNNCTAGTTAACNGNN---
 A C G T A C G T A C G T A C G T T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTARTTGACAATYACA
----TTGACAG-----
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTARTTGACAATYACA
---CTTGGCAA-----
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTARTTGACAATYACA
----TTGACAGG----
 T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T

HESX1/MA0894.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTARTTGACAATYACA
GCTAATTGGC-------
 A C G T T A G C A C G T G T C A T C A G C G A T A C G T A C T G C T G A G T A C C G T A G T C A C G A T A G T C C G T A A G T C G T C A
T C A G G A T C C G A T C T G A T C G A A C G T A G C T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T