Information for 2-TAGTCAAAAS (Motif 21)

C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
Reverse Opposite:
A T C G A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A
p-value:1e-6
log p-value:-1.458e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif36.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets44.7 +/- 22.5bp
Average Position of motif in Background39.8 +/- 37.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0001.1_Arid3a_1/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TAGTCAAAAS--
GGGTTTAATTAAAATTC
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TAGTCAAAAS
NATTCAAAT-
 C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAGTCAAAAS
GCAATAAAAA-
 A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TAGTCAAAAS
AAAAGTCAA---
 A C G T A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAGTCAAAAS
GGTAATAAAAA-
 A C G T A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TAGTCAAAAS
--ATTAAA--
 C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TAGTCAAAAS
CCAATCAA---
 A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TAGTCAAAAS--
AAAGTAAACAAAAATT
 A C G T A C G T A C G T A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TAGTCAAAAS
CCAATAAAAA-
 A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TAGTCAAAAS
NCYAATAAAA--
 A C G T A C G T C G A T C G T A C T A G A C G T A G T C C G T A C G T A C G T A C G T A A T G C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T