Information for 2-TRGCTGWKWKAATYWR (Motif 2)

A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G
Reverse Opposite:
A G T C C G T A C T G A C G T A A C G T A C G T G T A C C G A T G T A C C G A T A G T C C G T A A C T G A G T C A G T C C G T A
p-value:1e-13
log p-value:-3.170e+01
Information Content per bp:1.804
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.7 +/- 22.5bp
Average Position of motif in Background38.3 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd3/MA0912.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TRGCTGWKWKAATYWR---
---TTGAGTTAATTAACCT
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TRGCTGWKWKAATYWR---
---TTGAGTTAATTAACCT
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0103.1_Meox1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TRGCTGWKWKAATYWR---
---CTGAGGTAATTACCNC
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C G A T T C A G C T G A C A T G T A C G G A C T T G C A G C T A C A G T A C G T C T G A G T A C G T A C A C G T A G T C

PH0020.1_Dlx1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TRGCTGWKWKAATYWR-
---CTGAGGTAATTAAT
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T
A C G T A C G T A C G T A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

PH0174.1_Vax1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TRGCTGWKWKAATYWR---
---CTNNGNTAATTAACNT
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

PH0014.1_Cphx/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TRGCTGWKWKAATYWR-
---ATGATCGAATCAAA
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T
A C G T A C G T A C G T C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A

PH0045.1_Hoxa1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TRGCTGWKWKAATYWR---
---CTGAGCTAATTACCGT
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0021.1_Dlx2/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TRGCTGWKWKAATYWR---
---CTGANNTAATTATNNN
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C

PH0090.1_Lbx2/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TRGCTGWKWKAATYWR-----
----TGCATTAATTAATGCGA
 A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T A C G G T A C G T C A G A C T G A C T C G T A T C G A A G C T C G A T C T G A C T G A A G C T A C T G T A G C C T A G T C G A

PB0125.1_Gata3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TRGCTGWKWKAATYWR-----
NNNNNCGATANNATCTNNNNAN
 A C G T A C G T C T A G C T A G G T A C A C G T A C T G C G T A C A T G C G T A A C T G C G T A C G T A A C G T A G C T C G A T T C A G A C G T A C G T A C G T A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A