Information for 8-BAGGATTCACAGAVCA (Motif 9)

A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
Reverse Opposite:
C G A T A C T G A C T G A C G T T G A C C G A T A T C G A C G T C T A G C G T A G C T A C G A T A G T C A G T C C A G T T C G A
p-value:1e-11
log p-value:-2.712e+01
Information Content per bp:1.768
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.2 +/- 25.2bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F4/MA0789.1/Jaspar

Match Rank:1
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:BAGGATTCACAGAVCA
----ATTTGCATA---
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:BAGGATTCACAGAVCA
-----ATGCCAGACN-
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:forward strand
Alignment:BAGGATTCACAGAVCA
---ATTTCCAAGAA--
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T A C G T A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:4
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:BAGGATTCACAGAVCA
----ATTTGCATA---
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:BAGGATTCACAGAVCA---
----ATTTGCATAACAATG
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:BAGGATTCACAGAVCA
---HTTTCCCASG---
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:BAGGATTCACAGAVCA
-CGGTTTCAAA-----
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:BAGGATTCACAGAVCA
----TTTCCCAGAAN-
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T A C G T A C G T A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:BAGGATTCACAGAVCA--
--GGATTGACAGGTCNTT
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A A C G T A C G T
A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

STAT1/MA0137.3/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:BAGGATTCACAGAVCA
----TTTCCTGGAAA-
 A G C T G T C A A C T G A C T G G C T A C G A T A C G T A G T C G T C A A T G C C G T A A C T G G T C A T G A C A G T C C G T A
A C G T A C G T A C G T A C G T G A C T A C G T A G C T G T A C A G T C G A C T C T A G A C T G T G C A C T G A T G C A A C G T