Information for 5-CCTCTGTGHAYTC (Motif 7)

A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C
Reverse Opposite:
C A T G C T G A C T G A A C G T C T A G A G T C C G T A A T G C C G T A C A T G C T G A C T A G A T C G
p-value:1e-11
log p-value:-2.727e+01
Information Content per bp:1.718
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.69%
Number of Background Sequences with motif98.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets47.0 +/- 22.2bp
Average Position of motif in Background53.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CCTCTGTGHAYTC--
----TGTGGATTNNN
 A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTCTGTGHAYTC-
--NNTGTGGATTSS
 A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C A C G T
A C G T A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTGTGHAYTC---
NTNTATGTGCACATNNN
 A C G T A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTGTGHAYTC---
NNGTATGTGCACATNNN
 A C G T A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTCTGTGHAYTC
CCTTTGTT-----
 A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTCTGTGHAYTC----
NNNNTGAGCACTGTNNG
 A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGTGHAYTC
ANTCCTTTGTCTNNNN
 A C G T A C G T A C G T A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCTCTGTGHAYTC
AGGVNCCTTTGT------
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCTCTGTGHAYTC-
NNNNTTTGTTTACNNT
 A C G T A C G T A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTCTGTGHAYTC
-CTTTGT------
 A T G C A G T C G A C T G T A C A C G T A T C G C G A T A C T G G A C T C G T A A G C T A G C T G T A C
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T