Information for 9-ATTDTAAATCHCTGGC (Motif 17)

G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C
Reverse Opposite:
A C T G A G T C A G T C C G T A C T A G C A G T A T C G C G T A A G C T A G C T G C A T C G T A G A T C C G T A C T G A A C G T
p-value:1e-9
log p-value:-2.177e+01
Information Content per bp:1.759
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.7 +/- 27.8bp
Average Position of motif in Background60.4 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.63
Offset:11
Orientation:forward strand
Alignment:ATTDTAAATCHCTGGC-
-----------TTGGCA
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.62
Offset:10
Orientation:reverse strand
Alignment:ATTDTAAATCHCTGGC---
----------NTTGGCANN
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:ATTDTAAATCHCTGGC----
--------TGATTGGCTANN
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:ATTDTAAATCHCTGGC-----
-----CAATCACTGGCAGAAT
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:ATTDTAAATCHCTGGC
----CAAATCACTG--
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ATTDTAAATCHCTGGC-
NTTGTTAATCCCTCTNN
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:ATTDTAAATCHCTGGC--
----------CTTGGCAA
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:ATTDTAAATCHCTGGC
-----AAATCACTGC-
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C
A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.53
Offset:8
Orientation:forward strand
Alignment:ATTDTAAATCHCTGGC--
--------GGTCTGGCAT
 G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Hoxc9/MA0485.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ATTDTAAATCHCTGGC
GGCCATAAATCAC----
 A C G T G T C A A G C T C G A T C A T G C G A T C G T A C T G A C T G A A C G T A T G C G C T A A G T C A C G T A C T G A C T G G T A C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T A C G T