Information for 5-CCATTGTGTCTGC (Motif 6)

A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G C T G A T A G C C T G A A G T C C G T A G T C A A C G T A C T G A C T G
p-value:1e-13
log p-value:-3.077e+01
Information Content per bp:1.892
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.7 +/- 30.6bp
Average Position of motif in Background31.7 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCATTGTGTCTGC
CCATTGTTYB---
 A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCATTGTGTCTGC
NNNCCATTGTGTNAN-
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGTGTCTGC
NCCATTGTTY----
 A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCATTGTGTCTGC
CCATTGTTTT---
 A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCATTGTGTCTGC
CCTTTGTT-----
 A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCATTGTGTCTGC
CCATTGTTC----
 A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTGTCTGC
NCCATTGTTC----
 A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCATTGTGTCTGC
CCWTTGTYYB---
 A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCATTGTGTCTGC
CCWTTGTY-----
 A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTGTCTGC
CTCATTGTC-----
 A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G C T A T C G A G C T A G T C A C G T A C T G A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T