Information for 3-GVGCCATGGCCDCCAC (Motif 4)

A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
Reverse Opposite:
A T C G A C G T A C T G A C T G G A C T A T C G A C T G A G T C A G T C C G T A A C G T A C T G A T C G A G T C A C T G A T G C
p-value:1e-15
log p-value:-3.675e+01
Information Content per bp:1.840
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 26.3bp
Average Position of motif in Background58.3 +/- 4.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GVGCCATGGCCDCCAC
TTGCCATGGCAACN--
 A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GVGCCATGGCCDCCAC
TTGCCATGGCAACC--
 A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GVGCCATGGCCDCCAC
GTTGCCATGGCAAC---
 A C G T A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GVGCCATGGCCDCCAC
GTTGCCATGGCAACM--
 A C G T A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GVGCCATGGCCDCCAC
GTTGCCATGGCAACCG-
 A C G T A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:6
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GVGCCATGGCCDCCAC---
-------GGCGACCACCGA
 A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GVGCCATGGCCDCCAC
------TGGGGCCCAC
 A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GVGCCATGGCCDCCAC
GGGGCCGAGGCCTG---
 A C G T A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GVGCCATGGCCDCCAC
CGTTGCCATGGCAACG--
 A C G T A C G T A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GVGCCATGGCCDCCAC
---TAATGGCGGNC--
 A T C G T G A C A C T G A T G C A G T C C G T A A C G T A C T G A C T G A G T C A T G C C G T A A G T C A G T C G T C A A T G C
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T A C G T