Information for 8-GAGGCGTGCGGCTCAG (Motif 19)

A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C G T A A C T G A G T C A G T C A C T G A G T C C G T A A G T C A C T G A G T C A G T C A C G T A G T C
p-value:1e-7
log p-value:-1.655e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.8 +/- 12.9bp
Average Position of motif in Background61.8 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGGCGTGCGGCTCAG
--GGCGCGCT------
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAGGCGTGCGGCTCAG
NNCGCGTGNN------
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAGGCGTGCGGCTCAG
--TGCGTG--------
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GAGGCGTGCGGCTCAG
--NGCCTGAGGCN---
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GAGGCGTGCGGCTCAG
CAAAGGCGTGGCCAG---
 A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GAGGCGTGCGGCTCAG
--TGCCTGAGGCN---
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GAGGCGTGCGGCTCAG
-TTGCGTGCVA-----
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GAGGCGTGCGGCTCAG
-MKGGGYGTGGCC---
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C A C G T A C G T A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GAGGCGTGCGGCTCAG
-----GTGGGCCCCA-
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GAGGCGTGCGGCTCAG
-GGACGTGC-------
 A C T G C G T A A C T G A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G
A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T