Information for 7-TTAGAAACTTRAD (Motif 9)

A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T
Reverse Opposite:
G C T A G C A T A G T C G T C A C G T A T A C G A C G T A G C T C G A T A G T C G C A T C T G A G T C A
p-value:1e-11
log p-value:-2.589e+01
Information Content per bp:1.603
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.19%
Number of Background Sequences with motif712.1
Percentage of Background Sequences with motif1.50%
Average Position of motif in Targets45.9 +/- 30.7bp
Average Position of motif in Background50.2 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTAGAAACTTRAD
TTTGAAACCG---
 A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTAGAAACTTRAD--
---GWAAYHTGAKMC
 A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PB0148.1_Mtf1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTAGAAACTTRAD
AAATAAGAAAAAAC--
 A C G T A C G T A C G T A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTAGAAACTTRAD
CCGTATTATAAACAA---
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTAGAAACTTRAD--
---GWAAYHTGABMC
 A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TTAGAAACTTRAD--
---GAAAGTGAAAGT
 A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T A C G T A C G T
A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTAGAAACTTRAD--
---GAAACTGAAACT
 A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T A C G T A C G T
A C G T A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTAGAAACTTRAD
ATTTGAATT-----
 A C G T A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TTAGAAACTTRAD
TATCATTAGAACGCT---
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTAGAAACTTRAD
ACTGAAACCA---
 A C G T G A C T C G T A T C A G C G T A T C G A T C G A A G T C C G A T C A G T T C A G C G T A C G A T
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T