Information for 6-TKRSCWKCYRCAAAGG (Motif 6)

A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A C T G A G T C C T G A A C T G G T A C C G A T A C T G A T C G A G T C T G A C C G T A
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.827
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 24.3bp
Average Position of motif in Background39.0 +/- 3.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:TKRSCWKCYRCAAAGG
--------AACAAAGG
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:TKRSCWKCYRCAAAGG
--------RACAAWGG
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TKRSCWKCYRCAAAGG
------ACWTCAAAGG
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:TKRSCWKCYRCAAAGG
---------ACAAAG-
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:TKRSCWKCYRCAAAGG-----
---------ACAAAGGNBCCT
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TKRSCWKCYRCAAAGG
------VRRACAAWGG
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TKRSCWKCYRCAAAGG---
---AAACAGACAAAGGAAT
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TKRSCWKCYRCAAAGG
------AAAACAAAGG
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TKRSCWKCYRCAAAGG
------ACATCAAAGG
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TKRSCWKCYRCAAAGG
------GGAACAAAGR
 A C G T A C T G T C A G A T G C A G T C C G T A A C T G G T A C A G C T C T A G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G