Information for 8-AAGTGCTAAAACC (Motif 10)

C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C
Reverse Opposite:
A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C T G A G T C G T C A G T A C A C G T A C G T
p-value:1e-10
log p-value:-2.506e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.6 +/- 17.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0116.1_Nkx2-9/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AAGTGCTAAAACC
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AAGTGCTAAAACC
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGTGCTAAAACC-
TAAAGTCGTAAAACAT
 A C G T A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAGTGCTAAAACC
AGGTGTTAAT---
 C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGTGCTAAAACC---
-NGNTCTAGAACCNGV
 C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C A C G T A C G T A C G T
A C G T C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

PH0112.1_Nkx2-3/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AAGTGCTAAAACC
CNTTAAGTACTTAANG-
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAGTGCTAAAACC
AAGGTGTKAA----
 A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGTGCTAAAACC-
TAAAGTCGTAAAACGT
 A C G T A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGTGCTAAAACC-
TAAAGTCGTAAAATAG
 A C G T A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAGTGCTAAAACC-
CAATTGCAAAAATAT
 A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C G T A C G T A C G T A C G T A A G T C T A G C A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T