Information for 9-GCCCACARAB (Motif 7)

T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
Reverse Opposite:
T A C G A G C T G A T C A C G T A C T G G C A T C A T G C T A G A C T G A G T C
p-value:1e-10
log p-value:-2.306e+01
Information Content per bp:1.611
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif299.2
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets39.3 +/- 26.0bp
Average Position of motif in Background54.0 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCCCACARAB
AAACCACAGAN
 A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCCCACARAB--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCCCACARAB
TACCCGCATN-
 A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCCCACARAB
CTGCCCGCA---
 A C G T A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCCCACARAB
NWAACCACADNN
 A C G T A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCCCACARAB
AGCCACTCAAG-
 A C G T A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCCCACARAB--
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0024.1_Gcm1_1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCCCACARAB--
TCGTACCCGCATCATT
 A C G T A C G T A C G T A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCCACARAB
AAACCACAGC-
 A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCCCACARAB
YCCGCCCACGCN-
 A C G T A C G T A C G T T C A G G T A C G A T C G T A C C G T A T G A C C G T A C T A G T C G A A T G C
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T