Information for 9-YMARMACMTKGGCCAG (Motif 21)

A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C A G T C G T C A C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C T G C T G A
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.845
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.4 +/- 17.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-YMARMACMTKGGCCAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:YMARMACMTKGGCCAG----
TCAGCACCATGGACAGCTCC
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Myc/MA0147.2/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:YMARMACMTKGGCCAG
-AAGCACATGG-----
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
A C G T T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:YMARMACMTKGGCCAG
-----AAYTAGGTCA-
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:YMARMACMTKGGCCAG
------CAAAGGTCAG
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:YMARMACMTKGGCCAG---
---------TGCCCAGNHW
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:YMARMACMTKGGCCAG
----CCGATTGGCT--
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:YMARMACMTKGGCCAG
--TATAAGTAGGTCAA
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:YMARMACMTKGGCCAG
----------TGCCAA
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:YMARMACMTKGGCCAG
--AACACCTGCT----
 A G C T G T A C C G T A C T A G G T A C C G T A A G T C G T A C C G A T A C G T A C T G A C T G G T A C A G T C C G T A C T A G
A C G T A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T A C G T A C G T