Information for 3-CCACYAGRGGGCR (Motif 2)

T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G
Reverse Opposite:
G A T C A C T G A G T C A G T C G T A C A G T C G T A C C G A T C T G A A T C G G C A T A C T G A C T G
p-value:1e-111
log p-value:-2.569e+02
Information Content per bp:1.756
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif13.03%
Number of Background Sequences with motif241.6
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets50.6 +/- 20.8bp
Average Position of motif in Background50.0 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGRGGGCR------
GCCASCAGGGGGCGCYVNNG
 A C G T T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGRGGGCR---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGRGGGCR----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCACYAGRGGGCR-----
-NNNAAGGGGGCGGGNNN
 T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCACYAGRGGGCR
--AACAGATGGC-
 T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCACYAGRGGGCR
CACCCCCGGGGGGG-
 A C G T A C G T T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGRGGGCR
NCCCCCCCGGGGGGN
 A C G T A C G T T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGRGGGCR
ACCCCCCCGGGGGGN
 A C G T A C G T T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGRGGGCR
DCHCAGCAGGRGGCC
 A C G T A C G T T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCACYAGRGGGCR--
---CAAGATGGCGGC
 T A G C A G T C C G T A T A G C G A C T C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G A C G T A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C