Information for 1-RHTTCTNAGAAWBNNV (Motif 1)

C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
Reverse Opposite:
A G T C C G T A A T G C T C G A G C A T A C G T A C G T A G T C A G C T A T G C C T G A A C T G C G T A C G T A C G T A A G T C
p-value:1e-62
log p-value:-1.446e+02
Information Content per bp:1.611
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif12.89%
Number of Background Sequences with motif601.1
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets45.2 +/- 23.0bp
Average Position of motif in Background50.9 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:RHTTCTNAGAAWBNNV
NTTTCTNAGAAA----
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:RHTTCTNAGAAWBNNV
ATTTCCAAGAA-----
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T A C G T A C G T A C G T

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:RHTTCTNAGAAWBNNV
ATTTCCNGGAAATN--
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
C T G A G A C T A C G T A C G T G T A C G A T C G C T A C T A G C A T G C G T A C G T A C T G A G A C T T A C G A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:4
Score:0.91
Offset:1
Orientation:forward strand
Alignment:RHTTCTNAGAAWBNNV
-TTTCCAGGAAATGG-
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
A C G T A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G A C G T

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.90
Offset:0
Orientation:forward strand
Alignment:RHTTCTNAGAAWBNNV
NTTTCCNGGAAA----
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A A C G T A C G T A C G T A C G T

STAT1/MA0137.3/Jaspar

Match Rank:6
Score:0.90
Offset:1
Orientation:forward strand
Alignment:RHTTCTNAGAAWBNNV
-TTTCCAGGAAA----
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A A C G T A C G T A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:7
Score:0.89
Offset:1
Orientation:forward strand
Alignment:RHTTCTNAGAAWBNNV
-CTTCTGGGAAA----
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
A C G T A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:8
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:RHTTCTNAGAAWBNNV
NCTTCCNGGAAGNN--
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.86
Offset:1
Orientation:forward strand
Alignment:RHTTCTNAGAAWBNNV
-CTTCCNGGAA-----
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
A C G T A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T A C G T A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:10
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:RHTTCTNAGAAWBNNV
-TTTCCTGGAAAGNNN
 C T A G G C A T A C G T A C G T A G T C G A C T T A C G C T G A A C T G C G T A C G T A C G T A A G C T T A C G C G A T T C A G
A C G T G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A