Information for 8-GAGGCTAACCTAT (Motif 10)

A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C T G A C T G C G A T A C G T C G T A C T A G T A G C A T G C A G C T A G T C
p-value:1e-13
log p-value:-3.010e+01
Information Content per bp:1.824
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.7 +/- 28.0bp
Average Position of motif in Background28.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGGCTAACCTAT----
-NNNNCAACCTTCGNGA
 A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

PH0167.1_Tcf1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTAACCTAT--
CCTTAGTTAACTAAAAT
 A C G T A C G T A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAGGCTAACCTAT-----
----TTGACCTANTTATN
 A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GAGGCTAACCTAT
---GCTAATCC--
 A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGGCTAACCTAT--
-----TGACCTARTT
 A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAGGCTAACCTAT
-NNACTTACCTN-
 A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTAACCTAT--
ACTTAGTTAACTAAAAA
 A C G T A C G T A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGGCTAACCTAT---
GATAACATCCTAGTAG
 A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTAACCTAT-
ACTATGCCAACCTACC
 A C G T A C G T A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAGGCTAACCTAT--
-----TGACCTTGAT
 A C T G C T G A A T C G A C T G A G T C A C G T C G T A C G T A G T A C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T