Information for 3-GCCSTTTCTCGCTGTG (Motif 3)

A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A G T A C C T G A A T C G G T A C A T C G C G T A T C A G C G T A G T C A C G T A A T G C C T A G A C T G A T G C
p-value:1e-12
log p-value:-2.827e+01
Information Content per bp:1.694
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.1 +/- 33.7bp
Average Position of motif in Background46.1 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCCSTTTCTCGCTGTG
NNGCACCTTTCTCC-----
 A C G T A C G T A C G T A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GCCSTTTCTCGCTGTG
ANTCCTTTGTCTNNNN-
 A C G T A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T A C G T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:3
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GCCSTTTCTCGCTGTG
BRRCVGTTDN--------
 A C G T A C G T A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:4
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCCSTTTCTCGCTGTG
GCTATTTTTAGC----
 A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GCCSTTTCTCGCTGTG
-CCATATATGG-----
 A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GCCSTTTCTCGCTGTG---
----NNTCCTGCTGTGNNN
 A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----GCCSTTTCTCGCTGTG
CCTTGCAATTTTTNN-----
 A C G T A C G T A C G T A C G T A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GCCSTTTCTCGCTGTG---
-NAGTTTCABTHTGACTNW
 A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GCCSTTTCTCGCTGTG--
---CTTTCANTATGACTV
 A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GCCSTTTCTCGCTGTG
GCTATTTTTGGM----
 A T C G A G T C G A T C T A C G A C G T A C G T A C G T A G T C C G A T T A G C A C T G T A G C G A C T A C T G A C G T A C T G
C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C A C G T A C G T A C G T A C G T