Information for 2-CCGGGGGKCAGCCACT (Motif 2)

A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
Reverse Opposite:
G T C A A C T G A C G T A C T G A C T G A G T C C G A T A T C G T G A C A T G C G A T C G T A C G T A C G T A C C T A G A T C G
p-value:1e-13
log p-value:-3.078e+01
Information Content per bp:1.737
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.9 +/- 17.5bp
Average Position of motif in Background47.9 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCGGGGGKCAGCCACT
CTGGCAGNCTGCCA--
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCGGGGGKCAGCCACT
--AGGTGNCAGACAG-
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CCGGGGGKCAGCCACT-
-----TGTCTGDCACCT
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:CCGGGGGKCAGCCACT---
---------MRSCACTYAA
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:CCGGGGGKCAGCCACT
---------TGCCAA-
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CCGGGGGKCAGCCACT-------
-------TAAGCCACTTGAAATT
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCGGGGGKCAGCCACT
---GGGGGAATCCCC-
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
A C G T A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.53
Offset:7
Orientation:forward strand
Alignment:CCGGGGGKCAGCCACT
-------CGTGCCAAG
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFKB2/MA0778.1/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCGGGGGKCAGCCACT
---AGGGGAATCCCCT
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
A C G T A C G T A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.53
Offset:9
Orientation:forward strand
Alignment:CCGGGGGKCAGCCACT
---------ATCCAC-
 A T G C G A T C C A T G A C T G A C T G C T A G T A C G A C T G A T G C G C T A A C T G A G T C A G T C G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T