Information for 5-CTCBAGAGTCCAT (Motif 11)

A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
Reverse Opposite:
C G T A C A G T A C T G C T A G C G T A A G T C A C G T A G T C A G C T T A C G A C T G C G T A A C T G
p-value:1e-9
log p-value:-2.156e+01
Information Content per bp:1.843
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.8 +/- 20.4bp
Average Position of motif in Background50.7 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCBAGAGTCCAT---
GGCAAAAGTCCAATAA
 A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTCBAGAGTCCAT
GGCTCYAKCAYC---
 A C G T A C G T A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTCBAGAGTCCAT
GTTCTCGCGAGANCC-
 A C G T A C G T A C G T A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
T A C G G A C T G A C T T G A C A G C T A G T C C A T G G T A C A C T G T C G A A C T G T C G A A C G T A G T C A T G C A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:4
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTCBAGAGTCCAT
TTGACCGAGAATTCC-
 A C G T A C G T A C G T A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CTCBAGAGTCCAT
CTCTCGCGAGATCTG
 A C G T A C G T A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
A G T C A G C T T G A C G A C T A G T C C T A G G A T C A C T G T C G A A C T G T C G A A G C T A G T C A G C T A T C G

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CTCBAGAGTCCAT
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

GFX(?)/Promoter/Homer

Match Rank:7
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CTCBAGAGTCCAT
ATTCTCGCGAGA----
 A C G T A C G T A C G T A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
T C G A G A C T A G C T T G A C A G C T G T A C T C A G G A T C A T C G T G C A A C T G C T G A A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CTCBAGAGTCCAT
CTYRAGTGSY---
 A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CTCBAGAGTCCAT
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:10
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CTCBAGAGTCCAT-----
-TTCNAAGTACTTNNNNN
 A G T C A C G T A G T C A G T C T C G A A C T G G T C A A C T G A C G T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T