Information for 6-CAGGCAGGCT (Motif 7)

A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
Reverse Opposite:
G T C A T A C G A T G C A G T C G C A T C T A G A T G C A T G C A C G T T A C G
p-value:1e-13
log p-value:-3.018e+01
Information Content per bp:1.741
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif4.92%
Number of Background Sequences with motif584.2
Percentage of Background Sequences with motif1.22%
Average Position of motif in Targets49.5 +/- 28.8bp
Average Position of motif in Background48.5 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAGGCAGGCT
CACGCA----
 A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CAGGCAGGCT
TBGCACGCAA---
 A C G T A C G T A C G T A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGGCT----
SCAGYCADGCATGAC
 A C G T A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGGCT
CCAGACAG---
 A C G T A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGGCT
CCAGACRSVB-
 A C G T A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CAGGCAGGCT
--CACAGN--
 A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGGCT
BCAGACWA---
 A C G T A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGGCAGGCT-
AAGGCAAGTGT
 A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAGGCT--
GTCACGCTCNCTGA
 A C G T A C G T A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T A C G T A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGGCAGGCT
ACAGGAAGTG-
 A C G T A T G C C G T A A T C G T A C G G A T C C G T A A C T G A T C G A T G C A C G T
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T