Information for 16-CGSTCSTSTCTGS (Motif 18)

A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
Reverse Opposite:
A T C G A G T C C G T A A C T G C G T A A T G C C G T A A T C G A C T G G T C A A T G C G T A C A C T G
p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.3 +/- 23.8bp
Average Position of motif in Background66.7 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CGSTCSTSTCTGS-----
-NNTNNTGTCTGGNNTNG
 A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CGSTCSTSTCTGS
-----CTGTCTGG
 A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CGSTCSTSTCTGS
---VBSYGTCTGG
 A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGSTCSTSTCTGS
NNGCACCTTTCTCC
 A C G T A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CGSTCSTSTCTGS
-----TWGTCTGV
 A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CGSTCSTSTCTGS---
------GGTCTGGCAT
 A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

GATA3/MA0037.2/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CGSTCSTSTCTGS
---TCTTATCT--
 A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
A C G T A C G T A C G T A G C T A G T C A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CGSTCSTSTCTGS
ACTTTCGTTTCT--
 A C G T A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGSTCSTSTCTGS
GTCATGCHTGRCTGS
 A C G T A C G T A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Gata4/MA0482.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CGSTCSTSTCTGS-
---TCTTATCTCCC
 A G T C A C T G A T C G A C G T A G T C A T G C A C G T A T C G A C G T A G T C A C G T A C T G A T G C A C G T
A C G T A C G T A C G T A G C T A T G C A G C T A C G T G T C A A C G T A G T C C G A T A T G C G A T C A G T C