Information for 7-TTTTAAAAAC (Motif 9)

G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C
Reverse Opposite:
C T A G C G A T G C A T G A C T G C A T G C A T C G T A C T G A C G T A C G T A
p-value:1e-7
log p-value:-1.731e+01
Information Content per bp:1.534
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif17.93%
Number of Background Sequences with motif5487.8
Percentage of Background Sequences with motif11.48%
Average Position of motif in Targets52.4 +/- 29.9bp
Average Position of motif in Background49.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAAAC-
-TTTGAAACCG
 G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC--
CCGTATTATAAACAA
 A C G T A C G T A C G T G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAAAC
NATTCAAAT--
 A C G T G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
GTCGTAAAAA-
 A C G T G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
CCTTTTATAGNC
 A C G T A C G T G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTTTAAAAAC-----
GTATAAAAGGCGGGG
 G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTTTAAAAAC-----
GTATAAAAGGCGGGG
 G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0148.1_Mtf1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC-
AAATAAGAAAAAAC
 A C G T A C G T A C G T G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
NCYAATAAAA--
 A C G T A C G T G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC--
CAATTGCAAAAATAT
 A C G T A C G T A C G T G C A T G A C T G A C T G C A T C G T A C G T A C T G A C G T A G C T A G A T C A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T