Information for 6-TTGCTGCCCACCWGKG (Motif 4)

C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G
Reverse Opposite:
A G T C G T C A A G T C C G A T C T A G A C T G A C G T A C T G A C T G A C T G A T G C C G T A A C T G T A G C G T C A G C T A
p-value:1e-13
log p-value:-3.210e+01
Information Content per bp:1.808
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.3 +/- 24.1bp
Average Position of motif in Background61.6 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTGCTGCCCACCWGKG
---ATGCCCACC----
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTGCTGCCCACCWGKG-
--GGCCYCCTGCTGDGH
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTGCTGCCCACCWGKG-
---NTGCCCANNGGTNA
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:4
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TTGCTGCCCACCWGKG
-----NNVCAGCTGB-
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TTGCTGCCCACCWGKG
------ACCACCTGTT
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TTGCTGCCCACCWGKG--
------CACAGCAGGGGG
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TTGCTGCCCACCWGKG---
-----CCCCCCCGGGGGNN
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TTGCTGCCCACCWGKG---
----TCNCCTGCTGNGNNN
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TTGCTGCCCACCWGKG--
------NVCAGCTGBBNN
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TTGCTGCCCACCWGKG
---CTGCCCGCA----
 C A G T A C G T A C T G A G T C A C G T A T C G G T A C A G T C G T A C G T C A T A G C A G T C C G T A A C T G A C G T A C T G
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T