Information for 5-GAGTCAAAATGGCAGA (Motif 9)

C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
Reverse Opposite:
A G C T G T A C A C G T A T C G A T G C G T A C C G T A G C A T A C G T G C A T C G A T A C T G G T C A G A T C A G C T A G T C
p-value:1e-11
log p-value:-2.585e+01
Information Content per bp:1.673
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif34.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets54.0 +/- 18.6bp
Average Position of motif in Background45.8 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GAGTCAAAATGGCAGA
----CAAGATGGCGGC
 C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAGTCAAAATGGCAGA
----CAAGATGGCGGC
 C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GAGTCAAAATGGCAGA-
------TAATGGCGGNC
 C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGTCAAAATGGCAGA
BAGTCATANTGAAAG-
 C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCAAAATGGCAGA-
WNAGTCADAVTGAAACTN
 A C G T C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GAGTCAAAATGGCAGA
NATTCAAAT-------
 C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCAAAATGGCAGA
TGAGTCA----------
 A C G T C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCAAAATGGCAGA
TGAGTCATTTC------
 A C G T C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAGTCAAAATGGCAGA
ATGASTCATH--------
 A C G T A C G T C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
T G C A A C G T A C T G C G T A T A G C C G A T G T A C C G T A A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GAGTCAAAATGGCAGA
GATGAGTCAT---------
 A C G T A C G T A C G T C T A G C T G A C T A G C A G T A G T C C G T A C G T A C G T A C G T A G A C T C A T G T A C G A T G C T C G A A C T G T C G A
T A C G T G C A C G A T C A T G C G T A A T C G C G A T G T A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T