Information for 2-CCTTTAGGGT (Motif 5)

T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T
Reverse Opposite:
C T G A A T G C G T A C A G T C G A C T C G T A T G C A C T G A T C A G A T C G
p-value:1e-11
log p-value:-2.642e+01
Information Content per bp:1.681
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.82%
Number of Background Sequences with motif778.7
Percentage of Background Sequences with motif1.59%
Average Position of motif in Targets52.7 +/- 27.7bp
Average Position of motif in Background50.8 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTAGGGT
ANCGTTTANN--
 A C G T A C G T T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTAGGGT-
TGCCCTNAGGGCA
 A C G T A C G T T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCTTTAGGGT-
CCTTTTATAGNC
 A C G T T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTTTAGGGT-
-BTBRAGTGSN
 T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTTTAGGGT-
-CTYRAGTGSY
 T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTTTAGGGT-
DGWTTTATGRCN
 A C G T T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTTTAGGGT
CCTTTGAWGT
 T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T
A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTTTAGGGT
BCMATTAG---
 A C G T T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCTTTAGGGT--
--TTGAGTGSTT
 T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTTTAGGGT-
TGCCCTGAGGGCA
 A C G T A C G T T A G C A G T C G A C T A C G T G C A T C T G A C T A G A C T G T A C G G A C T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A