Information for 1-GCGAAAACCC (Motif 4)

A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C
Reverse Opposite:
A C T G C T A G A C T G C A G T A G C T A C G T A C G T G T A C A C T G A G T C
p-value:1e-11
log p-value:-2.683e+01
Information Content per bp:1.856
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif31.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets37.7 +/- 27.5bp
Average Position of motif in Background49.3 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCGAAAACCC--
GGGAAATCCCCN
 A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCGAAAACCC
TTCGCGCGAAAA---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C
A G C T A G C T T A G C A T C G A G T C A C T G A T G C A T C G T C G A C T G A T C G A C T G A A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCGAAAACCC-
-GGAAANCCCC
 A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCGAAAACCC-
-GGAAATCCCC
 A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

GLI2/MA0734.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCGAAAACCC--
GCGACCACACTG
 A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T A C G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

ZBTB7A/MA0750.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCGAAAACCC-
GGCGACCACCGA
 A C G T A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T
A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCGAAAACCC-
-GGAAATTCCC
 A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCGAAAACCC-
CGTATCGAAACCAAA
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCGAAAACCC
GGGGGAATCCCC
 A C G T A C G T A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

PB0036.1_Irf6_1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCGAAAACCC---
CTGATCGAAACCAAAGT
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A G T C A C T G A G T C A A G T C G A T C G T A C A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T