Information for 7-SMAAAGCACA (Motif 34)

A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A
Reverse Opposite:
C G A T T C A G C A G T A C T G G T A C G C A T G C A T A C G T C A G T T A G C
p-value:1e-7
log p-value:-1.792e+01
Information Content per bp:1.546
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif260.2
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets49.5 +/- 24.2bp
Average Position of motif in Background51.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:SMAAAGCACA-
-CAAATCACTG
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-SMAAAGCACA
TCCAATCCACA
 A C G T A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Gfi1b/MA0483.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:SMAAAGCACA---
--AAATCACAGCA
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:SMAAAGCACA--
--AAACCACANN
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T A C G T
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:SMAAAGCACA--
SSAATCCACANN
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:SMAAAGCACA-------
-CGAAGCACACAAAATA
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:SMAAAGCACA-
-NAAACCACAG
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T
A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:SMAAAGCACA--
--AAACCACAGC
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T A C G T
A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:SMAAAGCACA---
--AAACCACAGAN
 A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T A C G T A C G T
A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----SMAAAGCACA---
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A T C G G T C A T G C A C G T A C G T A C A T G G T A C G T C A A G T C G C T A A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A