Information for 10-TCAGCCAGGCAAT (Motif 25)

A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A T G C A G T C C G A T A C T G A C T G A G T C A C G T A T C G C G T A
p-value:1e-8
log p-value:-2.053e+01
Information Content per bp:1.892
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.8 +/- 24.5bp
Average Position of motif in Background70.7 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCAGCCAGGCAAT--
---GSCTGTCACTCA
 A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCAGCCAGGCAAT
-CAGCC-------
 A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TCAGCCAGGCAAT
----CTTGGCAA-
 A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCAGCCAGGCAAT--
SCAGYCADGCATGAC
 A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCAGCCAGGCAAT
BCAGACWA-----
 A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCAGCCAGGCAAT
ATAATCCC------
 A C G T A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCAGCCAGGCAAT---
----NCTGTCAATCAN
 A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCAGCCAGGCAAT---
CAAATCCAGACATCACA
 A C G T A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TCAGCCAGGCAAT
---NACAGGAAAT
 A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TCAGCCAGGCAAT
ACTAGCCAATCA--
 A C G T A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T C G A G T C C G T A G T C A A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T