Information for 5-ACACAGATTA (Motif 20)

C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A
Reverse Opposite:
A C G T G C T A G T C A C G A T A T G C A C G T A C T G C G A T A T C G C G A T
p-value:1e-9
log p-value:-2.232e+01
Information Content per bp:1.838
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif112.6
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets60.0 +/- 16.3bp
Average Position of motif in Background46.3 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ACACAGATTA--
TTGCCCGGATTAGG
 A C G T A C G T C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

OTX1/MA0711.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:ACACAGATTA-
---CGGATTAN
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T
A C G T A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A

VENTX/MA0724.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ACACAGATTA-
--ACCGATTAG
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ACACAGATTA-
---NGGATTAA
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T
A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ACACAGATTA-
---RGGATTAR
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T
A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

PH0126.1_Obox6/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACACAGATTA---
AAAAACGGATTATTG
 A C G T A C G T C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T A C G T A C G T
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ACACAGATTA--
--GNGGATTAGN
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T A C G T
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ACACAGATTA--
--NNGGATTAGN
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACACAGATTA
-CACAGN---
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ACACAGATTA--
----GGATTAGC
 C G T A A T G C C G T A A G T C C G T A T A C G G C T A A C G T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C