Information for 5-AAAGGGCTCCGTA (Motif 16)

C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
Reverse Opposite:
A G C T T C G A T A G C C A T G T A C G G C T A T A C G G T A C G A T C A G T C A G C T A G C T A C G T
p-value:1e-10
log p-value:-2.356e+01
Information Content per bp:1.678
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif183.5
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets38.2 +/- 22.8bp
Average Position of motif in Background51.3 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AAAGGGCTCCGTA-
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

E2F3/MA0469.2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGCTCCGTA---
AAAAATGGCGCCATTTTT
 A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AAAGGGCTCCGTA
-----GCTCCG--
 C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAAGGGCTCCGTA
ACAAAGGNBCCT---
 A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:5
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------AAAGGGCTCCGTA
NANAGATCAAAGGGNNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AAAGGGCTCCGTA
RACAAWGG--------
 A C G T A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AAAGGGCTCCGTA
ACATCAAAGG--------
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGGGCTCCGTA
AAAACAAAGG--------
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AAAGGGCTCCGTA
AACAAAGG--------
 A C G T A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AAAGGGCTCCGTA
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T C G T A C T G A C T G A T A C G C T A G A C T G A G T C C A G T A T G C G T A C A C T G A G C T C T G A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T