Information for 12-TTAGGACATACTA (Motif 16)

C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
Reverse Opposite:
A C G T C G T A A T C G A G C T C G T A A C G T A C T G C G A T A G T C A G T C A C G T C T G A C G T A
p-value:1e-11
log p-value:-2.548e+01
Information Content per bp:1.930
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.4 +/- 21.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0096.1_Zfp187_1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTAGGACATACTA
TTATTAGTACATAN--
 A C G T A C G T A C G T C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTAGGACATACTA
TRAGGTCA-----
 C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTAGGACATACTA----
-GATAACATCCTAGTAG
 C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TTAGGACATACTA
AAYTAGGTCA-----
 A C G T A C G T C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTAGGACATACTA
AAGATCGGAANTNNNA
 A C G T A C G T A C G T C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTAGGACATACTA
--AGGTCA-----
 C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TTAGGACATACTA
TATAAGTAGGTCAA----
 A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGGACATACTA
ANNTTTTACGACNTNN--
 A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A A C G T A C G T

Crem/MA0609.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TTAGGACATACTA
TTACGTCATN---
 C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
A C G T A C G T C G T A A G T C A C T G A C G T G T A C C G T A A G C T G T C A A C G T A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGGACATACTA
NNNTTTTACGACNTTN--
 A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C G T C T G A A T G C A C G T C G T A
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A A C G T A C G T