Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 743)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48067)	% of Background Sequences with Motif
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-83	-1.918e+02	0.0000	112.0	15.07%	572.0	1.19%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-64	-1.484e+02	0.0000	193.0	25.98%	2991.0	6.24%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-62	-1.428e+02	0.0000	168.0	22.61%	2327.7	4.86%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-57	-1.334e+02	0.0000	168.0	22.61%	2491.3	5.20%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-43	-9.934e+01	0.0000	137.0	18.44%	2182.3	4.56%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-40	-9.241e+01	0.0000	110.0	14.80%	1503.7	3.14%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-40	-9.241e+01	0.0000	79.0	10.63%	725.2	1.51%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-39	-9.181e+01	0.0000	94.0	12.65%	1084.8	2.26%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-39	-9.160e+01	0.0000	100.0	13.46%	1242.9	2.59%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-39	-9.072e+01	0.0000	101.0	13.59%	1282.9	2.68%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-39	-9.038e+01	0.0000	126.0	16.96%	2018.2	4.21%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-34	-7.935e+01	0.0000	103.0	13.86%	1531.3	3.20%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-34	-7.897e+01	0.0000	62.0	8.34%	505.1	1.05%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-32	-7.465e+01	0.0000	179.0	24.09%	4394.6	9.17%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-32	-7.443e+01	0.0000	107.0	14.40%	1751.7	3.66%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-30	-7.125e+01	0.0000	317.0	42.66%	11135.6	23.25%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-23	-5.489e+01	0.0000	60.0	8.08%	743.0	1.55%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-23	-5.462e+01	0.0000	117.0	15.75%	2617.9	5.46%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-22	-5.279e+01	0.0000	95.0	12.79%	1867.8	3.90%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-22	-5.174e+01	0.0000	100.0	13.46%	2074.0	4.33%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-21	-4.969e+01	0.0000	64.0	8.61%	940.2	1.96%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-21	-4.941e+01	0.0000	84.0	11.31%	1577.1	3.29%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-21	-4.838e+01	0.0000	102.0	13.73%	2250.2	4.70%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-19	-4.585e+01	0.0000	92.0	12.38%	1958.4	4.09%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-19	-4.537e+01	0.0000	79.0	10.63%	1511.5	3.16%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-18	-4.157e+01	0.0000	165.0	22.21%	5233.3	10.92%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-16	-3.769e+01	0.0000	39.0	5.25%	459.4	0.96%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-15	-3.684e+01	0.0000	75.0	10.09%	1612.5	3.37%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-13	-3.153e+01	0.0000	138.0	18.57%	4536.2	9.47%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-11	-2.638e+01	0.0000	30.0	4.04%	398.1	0.83%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-10	-2.373e+01	0.0000	39.0	5.25%	724.3	1.51%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-8	-2.065e+01	0.0000	64.0	8.61%	1787.9	3.73%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-8	-1.919e+01	0.0000	34.0	4.58%	676.8	1.41%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-8	-1.905e+01	0.0000	60.0	8.08%	1694.0	3.54%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-7	-1.646e+01	0.0000	76.0	10.23%	2554.0	5.33%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-7	-1.622e+01	0.0000	8.0	1.08%	34.4	0.07%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-6	-1.609e+01	0.0000	50.0	6.73%	1410.9	2.95%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-6	-1.519e+01	0.0000	10.0	1.35%	71.4	0.15%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-6	-1.444e+01	0.0000	11.0	1.48%	97.5	0.20%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-6	-1.428e+01	0.0000	40.0	5.38%	1076.7	2.25%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-6	-1.425e+01	0.0000	22.0	2.96%	403.2	0.84%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-6	-1.417e+01	0.0000	20.0	2.69%	341.6	0.71%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-5	-1.303e+01	0.0000	60.0	8.08%	2029.5	4.24%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-5	-1.270e+01	0.0000	10.0	1.35%	94.8	0.20%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-5	-1.206e+01	0.0000	30.0	4.04%	765.2	1.60%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-5	-1.154e+01	0.0001	40.0	5.38%	1209.7	2.53%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-4	-1.143e+01	0.0001	213.0	28.67%	10517.5	21.96%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-4	-1.122e+01	0.0001	48.0	6.46%	1588.5	3.32%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-4	-1.117e+01	0.0001	38.0	5.11%	1141.7	2.38%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-4	-1.108e+01	0.0001	68.0	9.15%	2559.5	5.34%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-4	-1.078e+01	0.0001	92.0	12.38%	3817.0	7.97%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-1.053e+01	0.0002	76.0	10.23%	3010.9	6.29%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-4	-1.040e+01	0.0002	65.0	8.75%	2466.2	5.15%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-4	-1.020e+01	0.0003	48.0	6.46%	1655.3	3.46%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-4	-1.020e+01	0.0003	37.0	4.98%	1150.7	2.40%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-4	-9.705e+00	0.0004	27.0	3.63%	744.7	1.55%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-4	-9.402e+00	0.0005	44.0	5.92%	1521.9	3.18%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-9.116e+00	0.0007	15.0	2.02%	303.5	0.63%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-3	-9.033e+00	0.0007	14.0	1.88%	271.5	0.57%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-3	-8.981e+00	0.0008	58.0	7.81%	2237.4	4.67%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-3	-8.900e+00	0.0008	40.0	5.38%	1367.2	2.85%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-8.260e+00	0.0015	7.0	0.94%	78.9	0.16%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-8.245e+00	0.0015	55.0	7.40%	2151.1	4.49%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.751e+00	0.0024	7.0	0.94%	85.8	0.18%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-3	-7.591e+00	0.0028	31.0	4.17%	1034.8	2.16%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-7.416e+00	0.0033	18.0	2.42%	475.6	0.99%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-6.985e+00	0.0050	190.0	25.57%	9947.2	20.76%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-6.485e+00	0.0082	114.0	15.34%	5586.3	11.66%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-6.429e+00	0.0085	7.0	0.94%	107.4	0.22%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-6.383e+00	0.0088	40.0	5.38%	1561.8	3.26%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-6.336e+00	0.0091	60.0	8.08%	2606.5	5.44%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-6.018e+00	0.0123	19.0	2.56%	584.1	1.22%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.835e+00	0.0146	25.0	3.36%	870.2	1.82%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.707e+00	0.0163	21.0	2.83%	692.6	1.45%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-5.592e+00	0.0181	25.0	3.36%	887.2	1.85%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.004e+00	0.0321	8.0	1.08%	175.5	0.37%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-4.852e+00	0.0369	18.0	2.42%	607.2	1.27%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-4.841e+00	0.0369	43.0	5.79%	1873.9	3.91%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-4.822e+00	0.0371	6.0	0.81%	110.0	0.23%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-4.813e+00	0.0371	33.0	4.44%	1351.0	2.82%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.631e+00	0.0438	8.0	1.08%	187.6	0.39%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-4.496e+00	0.0495	9.0	1.21%	231.2	0.48%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-4.117e+00	0.0714	45.0	6.06%	2073.0	4.33%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-4.104e+00	0.0716	40.0	5.38%	1801.8	3.76%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-4.083e+00	0.0722	31.0	4.17%	1322.3	2.76%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-4.062e+00	0.0729	53.0	7.13%	2523.2	5.27%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-4.037e+00	0.0739	9.0	1.21%	250.6	0.52%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-3.924e+00	0.0817	7.0	0.94%	173.7	0.36%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.826e+00	0.0891	46.0	6.19%	2168.7	4.53%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.810e+00	0.0896	8.0	1.08%	218.1	0.46%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.683e+00	0.1006	5.0	0.67%	106.0	0.22%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.579e+00	0.1103	6.0	0.81%	146.4	0.31%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.462e+00	0.1228	46.0	6.19%	2223.6	4.64%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.358e+00	0.1348	94.0	12.65%	5032.7	10.51%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.313e+00	0.1395	10.0	1.35%	331.7	0.69%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.189e+00	0.1563	7.0	0.94%	203.1	0.42%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.163e+00	0.1587	30.0	4.04%	1377.1	2.87%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.977e+00	0.1892	34.0	4.58%	1624.3	3.39%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.951e+00	0.1922	33.0	4.44%	1572.6	3.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.948e+00	0.1922	41.0	5.52%	2023.2	4.22%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.877e+00	0.2029	6.0	0.81%	174.9	0.37%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-2.839e+00	0.2087	209.0	28.13%	12234.2	25.54%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.744e+00	0.2274	85.0	11.44%	4647.9	9.70%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.718e+00	0.2311	4.0	0.54%	97.9	0.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.643e+00	0.2467	58.0	7.81%	3066.2	6.40%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.579e+00	0.2605	5.0	0.67%	144.5	0.30%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.578e+00	0.2605	22.0	2.96%	1014.2	2.12%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.556e+00	0.2615	5.0	0.67%	145.5	0.30%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.498e+00	0.2747	61.0	8.21%	3276.1	6.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.489e+00	0.2747	19.0	2.56%	861.4	1.80%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.475e+00	0.2761	39.0	5.25%	1991.1	4.16%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.462e+00	0.2772	49.0	6.59%	2576.3	5.38%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-2.325e+00	0.3151	33.0	4.44%	1672.4	3.49%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.277e+00	0.3275	10.0	1.35%	404.8	0.85%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.241e+00	0.3368	13.0	1.75%	565.1	1.18%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.221e+00	0.3404	13.0	1.75%	567.3	1.18%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.219e+00	0.3404	32.0	4.31%	1633.0	3.41%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.218e+00	0.3404	14.0	1.88%	621.8	1.30%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.188e+00	0.3430	22.0	2.96%	1067.1	2.23%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.137e+00	0.3581	11.0	1.48%	469.3	0.98%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.104e+00	0.3668	32.0	4.31%	1655.0	3.45%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.065e+00	0.3782	20.0	2.69%	972.5	2.03%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.053e+00	0.3797	10.0	1.35%	424.8	0.89%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.050e+00	0.3797	37.0	4.98%	1957.2	4.09%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.049e+00	0.3797	8.0	1.08%	320.9	0.67%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.962e+00	0.4061	6.0	0.81%	225.0	0.47%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.940e+00	0.4118	1.0	0.13%	10.1	0.02%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.880e+00	0.4338	7.0	0.94%	282.8	0.59%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.875e+00	0.4338	25.0	3.36%	1289.9	2.69%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.859e+00	0.4364	28.0	3.77%	1467.4	3.06%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.853e+00	0.4364	15.0	2.02%	720.1	1.50%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.830e+00	0.4425	5.0	0.67%	184.7	0.39%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.795e+00	0.4547	26.0	3.50%	1362.4	2.84%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.790e+00	0.4547	82.0	11.04%	4748.2	9.91%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.782e+00	0.4547	11.0	1.48%	506.1	1.06%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.764e+00	0.4586	2.0	0.27%	48.8	0.10%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.691e+00	0.4899	3.0	0.40%	95.1	0.20%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.670e+00	0.4963	71.0	9.56%	4112.5	8.58%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.650e+00	0.5029	21.0	2.83%	1096.2	2.29%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.619e+00	0.5150	20.0	2.69%	1043.6	2.18%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.617e+00	0.5150	21.0	2.83%	1102.6	2.30%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.613e+00	0.5150	49.0	6.59%	2783.2	5.81%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.568e+00	0.5305	46.0	6.19%	2613.1	5.45%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.510e+00	0.5586	13.0	1.75%	654.7	1.37%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.460e+00	0.5832	47.0	6.33%	2706.7	5.65%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.452e+00	0.5834	62.0	8.34%	3632.1	7.58%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.434e+00	0.5904	75.0	10.09%	4445.6	9.28%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.409e+00	0.6009	16.0	2.15%	845.8	1.77%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.383e+00	0.6128	10.0	1.35%	499.1	1.04%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.381e+00	0.6128	68.0	9.15%	4030.1	8.41%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.368e+00	0.6135	12.0	1.62%	617.5	1.29%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.353e+00	0.6192	18.0	2.42%	974.6	2.03%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.343e+00	0.6208	35.0	4.71%	2005.5	4.19%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.321e+00	0.6305	1.0	0.13%	21.0	0.04%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.309e+00	0.6344	32.0	4.31%	1831.0	3.82%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.298e+00	0.6374	12.0	1.62%	628.3	1.31%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.293e+00	0.6374	67.0	9.02%	4002.7	8.36%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.290e+00	0.6374	4.0	0.54%	171.6	0.36%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.280e+00	0.6374	1.0	0.13%	21.7	0.05%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.255e+00	0.6485	10.0	1.35%	517.2	1.08%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.241e+00	0.6537	1.0	0.13%	22.5	0.05%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.238e+00	0.6537	13.0	1.75%	697.8	1.46%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.237e+00	0.6537	9.0	1.21%	461.1	0.96%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.218e+00	0.6564	2.0	0.27%	70.3	0.15%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.210e+00	0.6582	3.0	0.40%	123.9	0.26%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.196e+00	0.6633	53.0	7.13%	3166.1	6.61%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.193e+00	0.6633	14.0	1.88%	765.3	1.60%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.172e+00	0.6711	7.0	0.94%	353.4	0.74%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.170e+00	0.6711	16.0	2.15%	890.7	1.86%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.168e+00	0.6711	17.0	2.29%	951.9	1.99%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.162e+00	0.6711	36.0	4.85%	2120.8	4.43%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.141e+00	0.6761	38.0	5.11%	2251.6	4.70%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.138e+00	0.6761	47.0	6.33%	2813.5	5.87%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.127e+00	0.6778	32.0	4.31%	1883.3	3.93%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.109e+00	0.6859	2.0	0.27%	76.3	0.16%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.083e+00	0.7004	9.0	1.21%	484.2	1.01%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.077e+00	0.7004	8.0	1.08%	425.5	0.89%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.077e+00	0.7004	81.0	10.90%	4977.1	10.39%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.074e+00	0.7004	11.0	1.48%	606.4	1.27%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.044e+00	0.7116	24.0	3.23%	1411.3	2.95%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.040e+00	0.7116	186.0	25.03%	11681.3	24.38%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.007e+00	0.7304	75.0	10.09%	4632.7	9.67%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.985e-01	0.7329	5.0	0.67%	257.9	0.54%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.900e-01	0.7351	7.0	0.94%	378.2	0.79%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-9.701e-01	0.7458	122.0	16.42%	7642.7	15.95%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-9.628e-01	0.7472	9.0	1.21%	504.5	1.05%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-9.508e-01	0.7522	33.0	4.44%	2003.1	4.18%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.269e-01	0.7622	5.0	0.67%	266.4	0.56%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.269e-01	0.7622	5.0	0.67%	266.9	0.56%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-9.182e-01	0.7648	120.0	16.15%	7548.1	15.76%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.091e-01	0.7678	8.0	1.08%	452.4	0.94%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-9.035e-01	0.7681	17.0	2.29%	1013.1	2.11%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.550e-01	0.8021	11.0	1.48%	649.1	1.36%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-8.482e-01	0.8034	44.0	5.92%	2740.8	5.72%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.083e-01	0.8318	6.0	0.81%	346.0	0.72%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.037e-01	0.8318	3.0	0.40%	159.2	0.33%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.037e-01	0.8318	3.0	0.40%	159.2	0.33%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.956e-01	0.8318	4.0	0.54%	222.8	0.47%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.907e-01	0.8318	9.0	1.21%	537.1	1.12%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.786e-01	0.8355	6.0	0.81%	350.4	0.73%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.737e-01	0.8355	10.0	1.35%	604.2	1.26%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-7.607e-01	0.8421	26.0	3.50%	1628.3	3.40%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.602e-01	0.8421	3.0	0.40%	164.4	0.34%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.192e-01	0.8692	3.0	0.40%	169.9	0.35%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.016e-01	0.8803	24.0	3.23%	1522.0	3.18%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.953e-01	0.8816	6.0	0.81%	365.4	0.76%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-6.850e-01	0.8864	2.0	0.27%	109.4	0.23%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.844e-01	0.8864	4.0	0.54%	238.5	0.50%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-6.791e-01	0.8864	9.0	1.21%	562.5	1.17%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.711e-01	0.8864	59.0	7.94%	3794.9	7.92%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.494e-01	0.9011	6.0	0.81%	374.2	0.78%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.411e-01	0.9043	35.0	4.71%	2259.5	4.72%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.377e-01	0.9043	8.0	1.08%	507.1	1.06%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.368e-01	0.9043	70.0	9.42%	4527.6	9.45%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.266e-01	0.9048	22.0	2.96%	1422.2	2.97%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.179e-01	0.9084	61.0	8.21%	3957.2	8.26%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.146e-01	0.9084	17.0	2.29%	1101.6	2.30%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.128e-01	0.9084	26.0	3.50%	1688.8	3.53%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-5.913e-01	0.9202	5.0	0.67%	320.7	0.67%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.910e-01	0.9202	1.0	0.13%	52.9	0.11%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.896e-01	0.9202	3.0	0.40%	187.9	0.39%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.848e-01	0.9202	24.0	3.23%	1570.4	3.28%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.837e-01	0.9202	33.0	4.44%	2158.3	4.51%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.810e-01	0.9202	104.0	14.00%	6772.5	14.14%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.803e-01	0.9202	30.0	4.04%	1965.0	4.10%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-5.633e-01	0.9202	37.0	4.98%	2430.4	5.07%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-5.525e-01	0.9228	7.0	0.94%	462.1	0.96%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.516e-01	0.9228	52.0	7.00%	3416.2	7.13%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.430e-01	0.9235	30.0	4.04%	1983.6	4.14%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.342e-01	0.9276	2.0	0.27%	127.8	0.27%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.294e-01	0.9280	42.0	5.65%	2777.6	5.80%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.262e-01	0.9280	8.0	1.08%	537.0	1.12%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.130e-01	0.9353	9.0	1.21%	607.7	1.27%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.060e-01	0.9379	2.0	0.27%	131.6	0.27%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.952e-01	0.9440	5.0	0.67%	341.7	0.71%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-4.933e-01	0.9440	31.0	4.17%	2076.6	4.33%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.893e-01	0.9440	3.0	0.40%	204.6	0.43%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.888e-01	0.9440	16.0	2.15%	1084.2	2.26%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.888e-01	0.9440	6.0	0.81%	411.2	0.86%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.734e-01	0.9447	3.0	0.40%	207.3	0.43%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.676e-01	0.9463	14.0	1.88%	959.3	2.00%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.645e-01	0.9463	13.0	1.75%	893.4	1.86%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.534e-01	0.9519	25.0	3.36%	1701.1	3.55%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.462e-01	0.9549	10.0	1.35%	697.2	1.46%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.382e-01	0.9586	57.0	7.67%	3829.0	7.99%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.293e-01	0.9632	81.0	10.90%	5413.3	11.30%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.260e-01	0.9632	13.0	1.75%	909.3	1.90%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.184e-01	0.9660	4.0	0.54%	290.1	0.61%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.891e-01	0.9906	19.0	2.56%	1334.4	2.79%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.820e-01	0.9937	8.0	1.08%	583.9	1.22%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.803e-01	0.9937	3.0	0.40%	227.8	0.48%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.749e-01	0.9937	42.0	5.65%	2887.8	6.03%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.738e-01	0.9937	9.0	1.21%	656.1	1.37%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.686e-01	0.9937	14.0	1.88%	1005.0	2.10%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.640e-01	0.9937	3.0	0.40%	231.3	0.48%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.629e-01	0.9937	12.0	1.62%	869.5	1.81%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.489e-01	0.9992	8.0	1.08%	596.1	1.24%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.454e-01	0.9992	5.0	0.67%	383.2	0.80%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.409e-01	0.9994	57.0	7.67%	3917.9	8.18%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.404e-01	0.9994	58.0	7.81%	3984.3	8.32%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.375e-01	0.9994	42.0	5.65%	2919.1	6.09%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.250e-01	1.0000	5.0	0.67%	391.0	0.82%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.225e-01	1.0000	1.0	0.13%	83.5	0.17%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.225e-01	1.0000	1.0	0.13%	83.4	0.17%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.218e-01	1.0000	20.0	2.69%	1443.0	3.01%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-3.167e-01	1.0000	21.0	2.83%	1515.6	3.16%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.960e-01	1.0000	15.0	2.02%	1114.2	2.33%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.817e-01	1.0000	2.0	0.27%	175.9	0.37%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.717e-01	1.0000	36.0	4.85%	2576.4	5.38%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.664e-01	1.0000	11.0	1.48%	850.0	1.77%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.655e-01	1.0000	5.0	0.67%	413.6	0.86%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.638e-01	1.0000	2.0	0.27%	180.2	0.38%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.625e-01	1.0000	8.0	1.08%	636.4	1.33%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.622e-01	1.0000	7.0	0.94%	564.0	1.18%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.606e-01	1.0000	8.0	1.08%	637.6	1.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.598e-01	1.0000	11.0	1.48%	854.3	1.78%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.455e-01	1.0000	11.0	1.48%	863.2	1.80%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.415e-01	1.0000	19.0	2.56%	1433.8	2.99%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.284e-01	1.0000	2.0	0.27%	191.9	0.40%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.257e-01	1.0000	1.0	0.13%	103.6	0.22%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.242e-01	1.0000	129.0	17.36%	8859.2	18.49%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.187e-01	1.0000	8.0	1.08%	661.1	1.38%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.999e-01	1.0000	1.0	0.13%	110.6	0.23%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.991e-01	1.0000	53.0	7.13%	3821.3	7.98%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.963e-01	1.0000	3.0	0.40%	287.5	0.60%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.952e-01	1.0000	26.0	3.50%	1968.8	4.11%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.921e-01	1.0000	7.0	0.94%	603.7	1.26%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.835e-01	1.0000	1.0	0.13%	115.3	0.24%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.832e-01	1.0000	7.0	0.94%	609.8	1.27%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.824e-01	1.0000	10.0	1.35%	835.5	1.74%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.790e-01	1.0000	26.0	3.50%	1987.9	4.15%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.775e-01	1.0000	10.0	1.35%	839.9	1.75%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.744e-01	1.0000	1.0	0.13%	118.9	0.25%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.744e-01	1.0000	23.0	3.10%	1781.7	3.72%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.692e-01	1.0000	2.0	0.27%	214.9	0.45%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.673e-01	1.0000	6.0	0.81%	543.2	1.13%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.595e-01	1.0000	26.0	3.50%	2012.7	4.20%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.534e-01	1.0000	27.0	3.63%	2091.9	4.37%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.484e-01	1.0000	6.0	0.81%	557.1	1.16%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.473e-01	1.0000	1.0	0.13%	128.2	0.27%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.450e-01	1.0000	65.0	8.75%	4735.1	9.88%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.391e-01	1.0000	2.0	0.27%	229.9	0.48%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.391e-01	1.0000	2.0	0.27%	229.5	0.48%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.325e-01	1.0000	33.0	4.44%	2547.9	5.32%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.312e-01	1.0000	3.0	0.40%	323.8	0.68%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.303e-01	1.0000	2.0	0.27%	234.4	0.49%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.297e-01	1.0000	185.0	24.90%	12801.4	26.72%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.292e-01	1.0000	52.0	7.00%	3878.0	8.10%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.236e-01	1.0000	5.0	0.67%	497.8	1.04%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.227e-01	1.0000	1.0	0.13%	139.3	0.29%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.184e-01	1.0000	20.0	2.69%	1641.7	3.43%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.129e-01	1.0000	1.0	0.13%	145.0	0.30%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.100e-01	1.0000	66.0	8.88%	4887.3	10.20%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.072e-01	1.0000	33.0	4.44%	2595.7	5.42%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.043e-01	1.0000	28.0	3.77%	2244.1	4.68%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-9.586e-02	1.0000	1.0	0.13%	154.3	0.32%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-9.323e-02	1.0000	6.0	0.81%	610.2	1.27%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.915e-02	1.0000	135.0	18.17%	9631.2	20.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.904e-02	1.0000	9.0	1.21%	857.3	1.79%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-8.869e-02	1.0000	8.0	1.08%	778.8	1.63%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-8.859e-02	1.0000	27.0	3.63%	2205.9	4.60%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.233e-02	1.0000	13.0	1.75%	1180.0	2.46%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.524e-02	1.0000	2.0	0.27%	276.9	0.58%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.460e-02	1.0000	5.0	0.67%	551.0	1.15%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.184e-02	1.0000	18.0	2.42%	1580.5	3.30%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.954e-02	1.0000	70.0	9.42%	5295.7	11.05%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.058e-02	1.0000	9.0	1.21%	906.5	1.89%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.029e-02	1.0000	64.0	8.61%	4917.1	10.26%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.997e-02	1.0000	1.0	0.13%	183.3	0.38%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.515e-02	1.0000	21.0	2.83%	1850.8	3.86%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.124e-02	1.0000	46.0	6.19%	3688.9	7.70%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.026e-02	1.0000	12.0	1.62%	1171.0	2.44%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.422e-02	1.0000	11.0	1.48%	1108.6	2.31%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.258e-02	1.0000	35.0	4.71%	2934.9	6.13%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.873e-02	1.0000	54.0	7.27%	4323.7	9.03%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.550e-02	1.0000	18.0	2.42%	1692.3	3.53%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.412e-02	1.0000	4.0	0.54%	536.2	1.12%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.042e-02	1.0000	11.0	1.48%	1157.0	2.42%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.760e-02	1.0000	18.0	2.42%	1730.5	3.61%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.684e-02	1.0000	92.0	12.38%	7085.9	14.79%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.968e-02	1.0000	9.0	1.21%	1040.4	2.17%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.465e-02	1.0000	1.0	0.13%	272.2	0.57%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.427e-02	1.0000	69.0	9.29%	5624.2	11.74%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.010e-02	1.0000	2.0	0.27%	426.2	0.89%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-8.699e-03	1.0000	57.0	7.67%	4864.6	10.15%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-7.417e-03	1.0000	44.0	5.92%	3934.5	8.21%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.335e-03	1.0000	37.0	4.98%	3408.5	7.12%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.335e-03	1.0000	12.0	1.62%	1413.7	2.95%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.344e-03	1.0000	26.0	3.50%	2580.2	5.39%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.030e-04	1.0000	25.0	3.36%	3040.7	6.35%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	30.6	0.06%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	101.3	0.21%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	137.7	0.29%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	8.6	0.02%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	139.9	0.29%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	30.4	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	10.7	0.02%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	36.5	0.08%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	45.0	0.09%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	66.8	0.14%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	13.0	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.3	0.01%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	36.3	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	10.4	0.02%