Information for 20-KCAKGGCYMTMKTMMA (Motif 24)

A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A G T C A A C T G C G T A A C T G C T A G C A T G G T A C A G T C G T C A C G A T A C T G G T A C
p-value:1e-9
log p-value:-2.219e+01
Information Content per bp:1.799
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.4 +/- 10.6bp
Average Position of motif in Background62.0 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.53
Offset:1
Orientation:forward strand
Alignment:KCAKGGCYMTMKTMMA-
-CTTGGCANNNTGCCAA
 A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.51
Offset:3
Orientation:forward strand
Alignment:KCAKGGCYMTMKTMMA---
---GAGCCCTTGTCCCTAA
 A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.51
Offset:7
Orientation:forward strand
Alignment:KCAKGGCYMTMKTMMA--
-------GCTCGTAAAAA
 A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.50
Offset:1
Orientation:forward strand
Alignment:KCAKGGCYMTMKTMMA
-CAAGGHCANV-----
 A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-KCAKGGCYMTMKTMMA
NTCAAGGTCA-------
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-KCAKGGCYMTMKTMMA
BTCAAGGTCA-------
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:7
Score:0.48
Offset:8
Orientation:forward strand
Alignment:KCAKGGCYMTMKTMMA--
--------GTCGTAAAAA
 A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.48
Offset:4
Orientation:forward strand
Alignment:KCAKGGCYMTMKTMMA----
----AAACCTCGTAAAATTT
 A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----KCAKGGCYMTMKTMMA
AAGTTCAAGGTCAGC-----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-KCAKGGCYMTMKTMMA
TTCAAGGTCAT------
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G G T A C A G T C G T A C A C G T G T A C A C G T A C G T G T C A G T A C C G T A
A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T