Information for 11-GAGCAGAGTYAGGWCA (Motif 12)

A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G C G A T A T G C A G T C A C G T C T G A T C G A A G T C C G A T A G T C A C G T A T C G A G T C A C G T A T G C
p-value:1e-13
log p-value:-3.161e+01
Information Content per bp:1.750
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 18.1bp
Average Position of motif in Background44.6 +/- 6.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGCAGAGTYAGGWCA-
RGGTCADNNAGAGGTCAV
 A C G T A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA
------AAYTAGGTCA
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA-
---TATAAGTAGGTCAA
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.55
Offset:8
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA
--------TRAGGTCA
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGCAGAGTYAGGWCA
AGGTCACGGAGAGGTCA
 A C G T A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA
------ATCAAGGTCA
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA----
----AGAGCGGGGTCAAGTA
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.52
Offset:10
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA
----------AGGTCA
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA
--GCTGASTCAGCA--
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A
A C G T A C G T T C A G T A G C G A C T C A T G C T G A A T C G G C A T G T A C C G T A A C T G T A G C T G C A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.51
Offset:9
Orientation:forward strand
Alignment:GAGCAGAGTYAGGWCA-
---------AAGGTCAC
 A T C G T C G A A C T G A T G C C G T A C T A G C G T A C T A G A G C T A G C T G T C A C T A G A T C G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C