Information for 22-GGMKSCATGGCAR (Motif 22)

A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A G T C A G T C C G T A A G C T A C T G T A C G G T C A A C T G G T A C A G T C
p-value:1e-6
log p-value:-1.573e+01
Information Content per bp:1.871
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.5 +/- 35.3bp
Average Position of motif in Background60.9 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGMKSCATGGCAR-
GTTGCCATGGCAAC
 A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGMKSCATGGCAR
NGTTGCCATGGCAA
 A C G T A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGMKSCATGGCAR
GGTTGCCATGGCAA
 A C G T A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGMKSCATGGCAR-
KGTTGCCATGGCAAC
 A C G T A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGMKSCATGGCAR---
GTTGCCATGGCAACCG
 A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGMKSCATGGCAR--
CGTTGCCATGGCAACN
 A C G T A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGMKSCATGGCAR--
CGTTGCCATGGCAACG
 A C G T A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GGMKSCATGGCAR
-----CTTGGCAA
 A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGMKSCATGGCAR--
CGTTGCCATGGCAACN
 A C G T A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGMKSCATGGCAR--
NGTTGCCATGGCAACG
 A C G T A C T G A C T G G T A C A C G T A T G C A G T C C T G A A C G T A C T G A C T G A G T C C G T A C T G A A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G