Information for 4-CAGCCATCTCAGG (Motif 6)

G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A T C G C G T A A C T G C G T A A C G T A C T G C T A G A G T C A C G T A C T G
p-value:1e-13
log p-value:-3.212e+01
Information Content per bp:1.944
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 27.2bp
Average Position of motif in Background49.7 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATCTCAGG
GCNGCCATCTTG--
 A C G T G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGCCATCTCAGG---
-GGTCANYTGAGGWCA
 G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATCTCAGG
GCCGCCATCTTG--
 A C G T G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCATCTCAGG-
NNNCTGATATCTCNNNN
 A C G T A C G T A C G T G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGCCATCTCAGG--
---CCATATATGGNA
 G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAGCCATCTCAGG
GTCCGCCATTA----
 A C G T A C G T G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATCTCAGG---
NNNTCCATCCCATAANN
 A C G T G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CAGCCATCTCAGG
--GCCATCTGTT-
 G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATCTCAGG
BCAGACWA------
 A C G T G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATCTCAGG-
SCAGYCADGCATGAC
 A C G T G T A C C G T A A C T G G A T C A G T C C G T A A C G T A G T C A C G T A T G C C G T A A C T G A C T G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C