Information for 21-CAAGTCAGAAATG (Motif 30)

A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G
Reverse Opposite:
G T A C C G T A A C G T A G C T A C G T G T A C C G A T A C T G C G T A A T G C A C G T A C G T C T A G
p-value:1e-7
log p-value:-1.841e+01
Information Content per bp:1.882
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.9 +/- 26.2bp
Average Position of motif in Background44.0 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CAAGTCAGAAATG
-----CACTAATT
 A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAAGTCAGAAATG--
TAAAGTCGTAAAACGT
 A C G T A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAAGTCAGAAATG--
TAAAGTCGTAAAATAG
 A C G T A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAAGTCAGAAATG--
TAAAGTCGTAAAACAT
 A C G T A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAAGTCAGAAATG
-AAGCCATAAAA-
 A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAAGTCAGAAATG
---GTCGTAAAAT
 A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G
A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PB0042.1_Mafk_1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAAGTCAGAAATG---
-AAGTCAGCANTTTTN
 A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAAGTCAGAAATG
---GTCATAAAAN
 A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

MAFK/MA0496.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAAGTCAGAAATG-
CTGAGTCAGCAATTT
 A C G T A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAAGTCAGAAATG-
--NGYCATAAAWCH
 A G T C G T C A C G T A A T C G A C G T A G T C C G T A A C T G C G T A C T G A C G T A A C G T A C T G A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A