Information for 11-CCAGAATTCA (Motif 29)

A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A T G C A G A C T A C G T A G T C C G A T A C T G T A C G
p-value:1e-6
log p-value:-1.517e+01
Information Content per bp:1.845
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif171.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets53.3 +/- 26.1bp
Average Position of motif in Background52.2 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF143/MA0088.2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCAGAATTCA---
TACCCACAATGCATTG
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAATTCA
ATGCCAGACN---
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAGAATTCA----
GGACTGAATTCATGCC
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A A C G T A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAGAATTCA---
TATCATAATTAAGGA
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A A C G T A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAATTCA
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAATTCA
TTGACCGAGAATTCC
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCAGAATTCA
GGCCATAAATCA
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCAGAATTCA-
--AAAAGTCAA
 A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCAGAATTCA
ATGCATAATTCA
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

FOXH1/MA0479.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCAGAATTCA--
-TCCAATCCACA
 A G T C A G T C C G T A A C T G C G T A C T G A A C G T G C A T A T G C C G T A A C G T A C G T
A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A