Information for 5-RGNAACAGGCCAGTGG (Motif 8)

C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
Reverse Opposite:
A G T C A G T C C G T A A G T C A C G T A C T G A T C G G A T C A G T C C G A T A T C G C G A T A C G T C G T A A G T C A G C T
p-value:1e-11
log p-value:-2.544e+01
Information Content per bp:1.801
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.3 +/- 26.4bp
Average Position of motif in Background71.2 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RGNAACAGGCCAGTGG
-----AAGGCAAGTGT
 C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RGNAACAGGCCAGTGG
TAGGGCAAAGGTCA----
 A C G T A C G T C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RGNAACAGGCCAGTGG
GGGRAARRGRMCAGMTG
 A C G T C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RGNAACAGGCCAGTGG
GTAGGGCAAAGGTCA----
 A C G T A C G T A C G T C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:RGNAACAGGCCAGTGG----
---NNNANTGCAGTGCNNTT
 C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RGNAACAGGCCAGTGG
TGACANARRCCAGRC-
 C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--RGNAACAGGCCAGTGG
TGGGGCAAAGGTCA----
 A C G T A C G T C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RGNAACAGGCCAGTGG---
---NNNNTGCCAGTGATTG
 C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:RGNAACAGGCCAGTGG---
-----NAGGTCANTGACCT
 C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RGNAACAGGCCAGTGG
---CAAAGGTCAG---
 C T G A A C T G C G A T G T C A C G T A A T G C C G T A A C T G C T A G A T G C A G T C C G T A A C T G C G A T A C T G C T A G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T