Information for 3-CCAGAGTACA (Motif 14)

A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A
Reverse Opposite:
A C G T A T C G A C G T T G C A T A G C G A C T A G T C A C G T T C A G T C A G
p-value:1e-9
log p-value:-2.139e+01
Information Content per bp:1.687
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif11.28%
Number of Background Sequences with motif2618.1
Percentage of Background Sequences with motif5.36%
Average Position of motif in Targets52.5 +/- 25.5bp
Average Position of motif in Background50.5 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------CCAGAGTACA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCAGAGTACA-
-CAAAGGTCAG
 A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAGTACA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCAGAGTACA----
GGCAAAAGTCCAATAA
 A C G T A C G T A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGAGTACA
--TRAGGTCA
 A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCAGAGTACA----
TCTCAAAGGTCACCTG
 A C G T A C G T A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCAGAGTACA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCAGAGTACA
--AGRGGTCA
 A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAGTACA
ATGCCAGACN---
 A C G T A C G T A C G T A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCAGAGTACA----
-CAAAGGTCAAGGG
 A G T C A G T C G T C A T C A G C T G A A T C G A C G T T G C A A T G C T G C A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G