Information for 2-CAAATGGATTKTC (Motif 7)

A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C
Reverse Opposite:
A C T G C T G A G T A C C G T A C G T A A G C T G T A C A G T C C G T A A C G T A C G T C G A T A T C G
p-value:1e-12
log p-value:-2.831e+01
Information Content per bp:1.815
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.3 +/- 27.8bp
Average Position of motif in Background48.8 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAAATGGATTKTC
CCTTAATNGNTTTT-
 A C G T A C G T A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAAATGGATTKTC
-TAATTGATTA--
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C
A C G T C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T A C G T

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAAATGGATTKTC-
AAAAACGGATTATTG
 A C G T A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C A C G T
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PAX3/MA0780.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAAATGGATTKTC
-TAATCGATTA--
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C
A C G T C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A A C G T A C G T

PAX7/MA0680.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAAATGGATTKTC
-TAATCGATTA--
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C
A C G T C G A T C T G A C G T A G A C T A G T C T C A G C T G A A C G T A C G T G C T A A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAAATGGATTKTC-
ANTATCGATTTTTN
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C A C G T
C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAAATGGATTKTC-
ATTATCGATTTTTT
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C A C G T
C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CAAATGGATTKTC
---ATTGATTYND
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C
A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAAATGGATTKTC
--NCTGGAATGC-
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C
A C G T A C G T G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAAATGGATTKTC--
CTCATGAATATTCAT
 A T G C C G T A G T C A G T C A A C G T A C T G A C T G C T G A A C G T A C G T A C T G A G C T A G T C A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T