Information for 4-TGKGCWCAGRGGCCAN (Motif 4)

C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
Reverse Opposite:
A T G C A C G T C A T G T C A G A G T C G A T C A G C T T A G C C G A T A T C G C G T A A T C G G A T C G T A C A G T C G C T A
p-value:1e-13
log p-value:-3.125e+01
Information Content per bp:1.607
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif5.77%
Number of Background Sequences with motif493.5
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets63.4 +/- 21.6bp
Average Position of motif in Background48.0 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGKGCWCAGRGGCCAN
NTNTATGTGCACATNNN----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A A C G T A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TGKGCWCAGRGGCCAN
CAGATGTGCACATACGT---
 A C G T A C G T A C G T A C G T C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGKGCWCAGRGGCCAN
AGGGGTCAGAGGTCA-
 C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGKGCWCAGRGGCCAN
-GAGGTCAAAGGTCA-
 C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGKGCWCAGRGGCCAN
AGAGTCCAAAGTCCA-
 C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGKGCWCAGRGGCCAN
CANAGNNCAAAGTCCA-
 A C G T C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGKGCWCAGRGGCCAN
----CACAGN------
 C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGKGCWCAGRGGCCAN
--TGCCCAGNHW----
 C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TGKGCWCAGRGGCCAN
CGAACAGTGCTCACTAT----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGKGCWCAGRGGCCAN
NNNNTTGGGCACNNCN-----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G C A T G C T A G T A G C G C A T A T G C C G T A A T C G T C G A C A T G T C A G A G T C G T A C T G C A T A C G
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T A C G T A C G T