Information for 11-GCCAGGCAAGGAA (Motif 21)

A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A G T C A G C T A C G T A C T G A G T C A G T C A G C T A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.289e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.6 +/- 30.4bp
Average Position of motif in Background30.8 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GCCAGGCAAGGAA
--AAGGCAAGTGT
 A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGGCAAGGAA-
TCCCAGMCRAGCCCC
 A C G T A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGGCAAGGAA
SCAGYCADGCATGAC-
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCCAGGCAAGGAA
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGGCAAGGAA
ATGCCCGGGCATGT--
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCAAGGAA
-CCAGACAG----
 A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCCAGGCAAGGAA-
GCCGCGCAGTGCGT
 A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGGCAAGGAA
ATGCCAGACN-----
 A C G T A C G T A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCAAGGAA
-CTTGGCAA----
 A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCAAGGAA
-BCAGACWA----
 A C T G A G T C A G T C C T G A A C T G A C T G A G T C C G T A C T G A A C T G C T A G C G T A C G T A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T