Information for 2-AGGATMTACGAGG (Motif 3)

T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G
Reverse Opposite:
A G T C A G T C A C G T G T A C C A T G A C G T T C G A A C T G C G T A C G A T A G T C A G T C A G C T
p-value:1e-13
log p-value:-3.166e+01
Information Content per bp:1.713
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif18.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets41.6 +/- 23.7bp
Average Position of motif in Background39.6 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGATMTACGAGG---
-GGTCANYTGAGGWCA
 T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G A C G T A C G T A C G T
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGGATMTACGAGG
--NTTTTACGAGN
 T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGGATMTACGAGG---
ANATTTTACGAGNNNN
 T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:AGGATMTACGAGG-
--------NGAAGC
 T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:5
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---AGGATMTACGAGG
NDCAGGAARTNN----
 A C G T A C G T A C G T T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGGATMTACGAGG---
GGGTTACTANAGGTCA
 T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G A C G T A C G T A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGGATMTACGAGG----
-NNAGGGACAAGGGCNC
 T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---AGGATMTACGAGG
ANCAGGATGT------
 A C G T A C G T A C G T T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGGATMTACGAGG---
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G A C G T A C G T A C G T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:AGGATMTACGAGG---
NAATTTTACGAGNTNN
 T C G A C T A G A C T G G C T A C G A T T G A C A C G T T G C A G T A C A C T G C G T A C T A G A C T G A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T