Information for 5-GCCTGATTMGATM (Motif 12)

A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
Reverse Opposite:
A C G T C G T A A C G T A T G C C A G T G T C A T G C A A C G T A G T C C G T A A C T G T C A G A G T C
p-value:1e-9
log p-value:-2.181e+01
Information Content per bp:1.738
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.8 +/- 24.0bp
Average Position of motif in Background61.3 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCTGATTMGATM
TWGTCTGV-------
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCTGATTMGATM
CTGTCTGG-------
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCCTGATTMGATM
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

DUXA/MA0884.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCTGATTMGATM--
--NTGATTAAATTAN
 A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A A C G T A C G T
A C G T A C G T G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCCTGATTMGATM
ATTGCCTGAGGCAAT-
 A C G T A C G T A C G T A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.57
Offset:-9
Orientation:forward strand
Alignment:---------GCCTGATTMGATM
GGGGCCGAGGCCTG--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGATTMGATM
TGCCTGAGGCN---
 A C G T A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCTGATTMGATM
AGGCCTNG-------
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0014.1_Cphx/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCTGATTMGATM--
-NTTGATTNNATCAN
 A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A A C G T A C G T
A C G T C G A T A G C T C G A T C T A G C G T A A C G T A C G T A T G C T A C G G T C A A C G T A G T C C G T A G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCTGATTMGATM
-GCTGTG------
 A C T G A G T C A G T C C G A T A C T G T G C A A C G T C A G T G T C A A T C G T G C A G C A T G T C A
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T