Information for 12-SCAGAKATTAGSR (Motif 17)

A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
Reverse Opposite:
A G C T A T G C A G T C A C G T C G T A C G T A A C G T G T A C A G C T A G T C A C G T A C T G A T C G
p-value:1e-11
log p-value:-2.590e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 25.2bp
Average Position of motif in Background73.6 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:SCAGAKATTAGSR
--NNGGATTAGN-
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:SCAGAKATTAGSR
GCAGTGATTT---
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:SCAGAKATTAGSR
---RGGATTAR--
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:SCAGAKATTAGSR
--ANAGATAAGAA
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:SCAGAKATTAGSR
--VRGGATTARN-
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:SCAGAKATTAGSR
--GNGGATTAGN-
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T

VENTX/MA0724.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:SCAGAKATTAGSR
--ACCGATTAG--
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:SCAGAKATTAGSR
----GGATTAGC-
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-SCAGAKATTAGSR
TGCTGTGATTT---
 A C G T A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:SCAGAKATTAGSR
---GGGATTANN-
 A T G C A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T C G T A A C T G A T C G T C G A
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T