Information for 17-TGTGTCCAGGGCG (Motif 26)

A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A G T C A G T C A C G T A C T G A C T G C G T A A G T C C G T A A G T C C G T A
p-value:1e-5
log p-value:-1.231e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.3 +/- 18.4bp
Average Position of motif in Background68.6 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGTGTCCAGGGCG-
NGTTGCCATGGCAA
 A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGTGTCCAGGGCG--
-GTTGCCATGGNAAC
 A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGTGTCCAGGGCG
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TGTGTCCAGGGCG----
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTCCAGGGCG
CTGTTGCTAGGS--
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTCCAGGGCG
NNNGTAACTANGNNA
 A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGTGTCCAGGGCG-
GGTTGCCATGGCAA
 A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGTGTCCAGGGCG
--TGCCCAGNHW-
 A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGTGTCCAGGGCG--
KGTTGCCATGGCAAC
 A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTCCAGGGCG
NNNNTTGTGTGCTTNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C T G A C T G A G T C A C T G
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T